Print summary information about a beam.data object
Usage
# S3 method for class 'beam.data'
print(x, ...)Examples
data(beam_dat)
print(beam_dat)
#> main.data: 265 rows and 8 columns.
#>
#> ID MRD29 RNA.clm Lesion.clm Lesion.id
#> PARASZ PARASZ 0.00 46 21 PARASZ
#> PARAYM PARAYM 0.00 47 108 PARAYM
#> PARCVM PARCVM 0.00 15 84 PARCVM
#> PAREGZ PAREGZ 0.49 170 142 PAREGZ
#> PARFDL PARFDL 0.00 184 175 PARFDL
#>
#> mtx.data:
#> mtx.data Lesion: 265 columns linked to 265 rows of main.data.
#> mtx.data RNA: 264 columns linked to 264 rows of main.data.
#>
#> Lesion:
#> PARWNW PASXUC PATXNR PASYIS PATBGC
#> ENSG00000264545_loss 1 1 1 1 0
#> ENSG00000147889_loss 1 1 1 1 0
#> ENSG00000224854_loss 1 1 1 1 0
#> ENSG00000148400_mutation 1 1 1 1 0
#> ENSG00000099810_loss 1 1 1 1 0
#>
#> RNA:
#> PARFIH PARFPJ PARFXJ PARKLK PARLJA
#> ENSG00000121410 0.4976379 0.29994795 1.13973142 0.32584690 0.35940872
#> ENSG00000148584 0.0000000 0.00000000 0.00000000 0.00000000 0.00000000
#> ENSG00000175899 0.0176369 0.11316706 0.02913480 0.00992041 0.02672925
#> ENSG00000166535 0.0000000 0.02261638 0.01278318 0.01735184 0.00000000
#> ENSG00000184389 0.1067503 1.46126661 0.32734246 0.56042150 0.49385225
#>
#> mtx.anns:
#> Lesion: 20 rows and 2 columns.
#> RNA: 20 rows and 2 columns.
#>
#> Lesion:
#> id gene
#> 1 ENSG00000264545_loss ENSG00000264545
#> 2 ENSG00000147889_loss ENSG00000147889
#> 3 ENSG00000224854_loss ENSG00000224854
#> 4 ENSG00000148400_mutation ENSG00000148400
#> 5 ENSG00000099810_loss ENSG00000099810
#>
#> RNA:
#> id gene
#> 1 ENSG00000121410 ENSG00000121410
#> 2 ENSG00000148584 ENSG00000148584
#> 3 ENSG00000175899 ENSG00000175899
#> 4 ENSG00000166535 ENSG00000166535
#> 5 ENSG00000184389 ENSG00000184389
#>
#> anns.mtch:
#> mtx.data mtx.anns id.clm nrow.mtx nrow.ann nrow.map
#> 1 Lesion Lesion id 20 20 20
#> 2 RNA RNA id 20 20 20
#>
#> set.data: 40 rows assigning sets to data.mtx rows.
#> set.id mtx.id row.id
#> 9 ENSG00000081760 RNA ENSG00000081760
#> 8 ENSG00000094914 RNA ENSG00000094914
#> 25 ENSG00000099810 Lesion ENSG00000099810_loss
#> 19 ENSG00000099810 RNA ENSG00000099810
#> 14 ENSG00000109576 RNA ENSG00000109576
#> 10 ENSG00000114771 RNA ENSG00000114771
#>
#>
#> set.anns: rows of set annotations.
#>
#> boot.index: 11 rows and 265 columns of bootstrap indices.
#> [,1] [,2] [,3] [,4] [,5]
#> [1,] 1 2 3 4 5
#> [2,] 179 14 195 118 229
#> [3,] 108 8 114 261 29
#> [4,] 55 19 241 218 155
#> [5,] 145 200 211 69 46